The typical layout for a Master Cue Sheet is all of the cues in order they are called. Usually with a description of each cue and where it is called. Lights, Sound, Deck, Rail, etc. are all intermingled.
However, to be honest, I have never used a Master Cue Sheet except for one show in college where it was required by a professor. It's never seemed necessary outside of college. Of course I've created cue sheets for deck and rail, and lighting designers sometimes create light or follow spot cue sheets, but they've always been separate for me.
What I do have is a run sheet which lists every entrance, exit, set change, rail cue, and anything else that needs to happen backstage. But lights, sound, etc, don't go on there.
I'm sure other SMs can chime in about their own experiences.