I would agree with Matthew that the typical arrangement would be for the SM to work with the creative team (putting cues into the prompt script, calling them, etc.) while the ASM runs the deck. However, I would have to say that I wouldn't characterize the process as "mine." I consider tech to be a part of the rehearsal process and what I try to do in the rehearsal process is to organize/run the rehearsal in a way that allows the creative team to create the production the way it has been envisioned by them. This means that I will vary the way the tech process goes forward after consulting with the director and the designers. I want them to do their best work and am willing to work the way we all decide is best for that production. It may mean putting some cues in my script before the actors are called to the stage or it may not. The director may need time to restage things if there set has levels that weren't built in the rehearsal hall.
At Steppenwolf, with very rare exceptions, we work through the show form the top without doing a cue to cue first. This makes the process much slower but allows everyone (including the cast) the chance to work through any and all problems. If you have some scenes without internal cues, it often doesn't take too long to run them but it can take a while to figure out where everyone will be if you skip chunks of the show. I should say that we have a lot of tech time with the actors (41 hours before we have an invited dress and another 5 hours the day after the dress before our first preview - and we have 9 days of previews/rehearsals). With less time, using cue to cues can be efficient but requires real planning on the SM's part. Also for us, the first day of tech is usually the first day on the set - we move over from the rehearsal hall at the end of the day before. Unless something has gone wrong, at our first tech the set is fully loaded in, the lights are focused, the speakers placed, the sound system checked, the costumes preset (and in the the dressing rooms) and often some of the designers have set basic cues on their own. But then we just bear down and work our way through. . .